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I have a R61 which uses a SST25VF016B chip instead. The pin description is:
6 Clock
5 (SI) Serial Data Input To transfer commands, addresses, or data serially into the device.
Inputs are latched on the rising edge of the serial clock.
2 (SO) Serial Data Output To transfer data serially out of the device.
Data is shifted out on the falling edge of the serial clock.

While for the atmel :
2 (L2) Coil Connection
5 (SDA) Serial Data,Open Drain I/O
6 (SCL) Serial Clock Input

In your step (7), to make the BIOS setup assume the password is blank, please tell me, do I just short pins 5&6 as you do or must I short pins 5,6&2? Thank you.